Nextflow workflow report

[cranky_perlman]

Run times

31-Aug-2026 21:32:46 - 31-Aug-2026 23:04:11 (duration: 1h 31m 25s)

  40 succeeded  

  0 cached  

  0 ignored  

  0 failed (1 retries)  

Nextflow command

nextflow run nf-core/sarek -r 3.10.0 -profile test,docker -c local.config --input 'https://raw.githubusercontent.com/nf-core/sarek/3.10.0/tests/csv/3.0/fastq_pair.csv' --outdir results -work-dir work

CPU-Hours

1.6 (76.1% failed)

Launch directory

/Users/yujuanzhang/Desktop/2026AI/github/luadtx_nextflow/sarek

Work directory

/Users/yujuanzhang/Desktop/2026AI/github/luadtx_nextflow/sarek/work

Project directory

/Users/yujuanzhang/.nextflow/assets/.repos/nf-core/sarek/clones/8ccac7ad37b05dd792447763bf9671b719824587

Script name

main.nf

Script ID

0b7d912f1202f8251f74163002fd99d4

Workflow name

nf-core/sarek

Workflow version

3.10.0

Workflow description

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

Workflow home page

https://github.com/nf-core/sarek

Workflow DOI

10.12688/f1000research.16665.2, 10.1093/nargab/lqae031, 10.5281/zenodo.3476425

Workflow session

e9b2e570-991c-498a-98dc-4f5a0513fd81

Workflow repository

https://github.com/nf-core/sarek, revision 3.10.0 (commit hash 8ccac7ad37b05dd792447763bf9671b719824587)

Workflow profile

test,docker

Nextflow version

version 26.04.6, build 12646 (09-07-2026 18:49 UTC)